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Freshmeat
Unix and related software in all stages of development. Daily release announcements. Not restricted to open-source software.
GNU/UNESCO Free Software Directory
Lists free software packages organized and searchable by category.
Java Open Source Software
A directory of open source software focused on java.
Open-Source Directory
Directory of open-source and just working programs.
SourceForge
Resources for open-source developers and a directory of in-development open-source software.